Introduction to Geospatial Raster and Vector Data with Python

Netherlands eScience Center

Online

November 21 - 23, 2022

9:00 - 13:00 CET

Instructors: Francesco Nattino, Ou Ku

Helpers: Djura Smits, Pranav Chandramouli

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General Information

The eScience Center offers a range of free workshops and training courses, open to all researchers affiliated with Dutch research organizations. We organize workshops covering digital skills needed to put reproducible research into practice. These include online collaboration, reproducible code and good programming practices. We also offer more advanced workshops such as GPU Programming, Parallel Programming and Deep Learning.

Python is one of the most popular programming languages for data science and analytics, with a large and steadily growing community in the field of Earth and Space Sciences. In this workshop, we will help participants with a working knowledge of Python to familiarize with the world of geospatial raster and vector data. We will introduce a set of tools from the Python ecosystem and show how these can be used to carry out practical geospatial data analysis tasks. In particular, we will consider satellite images and public geo-datasets and demonstrate how these can be opened, explored, manipulated, combined, and visualized using Python.

Who: 

The participant should:

  • have working knowledge of Python
  • have had exposure to the Bash shell

The participants DO NOT need to have prior knowledge on the Python tools this workshop is teaching.

Where: This training will take place online. The instructors will provide you with the information you will need to connect to this meeting.

When: November 21 - 23, 2022, 9:00 - 13:00 CET.

Requirements: Participants must have access to a computer with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.) that they have administrative privileges on. They should have a few specific software packages installed (listed below).

Accessibility: We are dedicated to providing a positive and accessible learning environment for all. Please notify the instructors in advance of the workshop if you require any accommodations or if there is anything we can do to make this workshop more accessible to you.

Contact: Please email or training@esciencecenter.nl for more information.


Code of Conduct

Participants are expected to follow those guidelines:

Syllabus

Schedule

Day 1

09:00 Welcome and icebreaker
09:15 Introduction to raster, vector, and CRS
09:45 Access satellite imagery using Python
10:30 Coffee break
10:45 Read and visualize raster data
11:30 Coffee break
11:45 Read and visualize raster data
12:30 Wrap-up
13:00 END

Day 2

09:00 Welcome and icebreaker
09:15 Vector data in Python
09:45 Crop raster data with rioxarray and geopandas
10:30 Coffee break
10:45 Crop raster data with rioxarray and geopandas
11:30 Coffee break
11:45 Raster Calculations in Python
12:30 Wrap-up
13:00 END

Day 3

09:00 Welcome and icebreaker
09:15 Calculating Zonal Statistics on Rasters
10:15 Coffee break
10:30 Parallel raster computations using Dask
11:15 Coffee break
11:30 Parallel raster computations using Dask
12:30 Wrap-up
13:00 END

Setup

To participate in this workshop, you will need access to software as described below. In addition, you will need an up-to-date web browser.

We maintain a list of common issues that occur during installation as a reference for instructors that may be useful on the Configuration Problems and Solutions wiki page.

Software setup

To be able to follow this workshop, a few setup steps are required. Please follow the setup instructions in preparation for the workshop.

This instruction will help you to:

Please make sure you have followed this instruction to setup in advance.

Install the videoconferencing client

If you haven't used Zoom before, go to the official website to download and install the Zoom client for your computer.

Set up your workspace

Like other Carpentries workshops, you will be learning by "coding along" with the Instructors. To do this, you will need to have both the window for the tool you will be learning about (a terminal, RStudio, your web browser, etc..) and the window for the Zoom video conference client open. In order to see both at once, we recommend using one of the following set up options:

This blog post includes detailed information on how to set up your screen to follow along during the workshop.