<!-- .slide: data-state="title" -->
# Documentation
===
<!-- .slide: data-state="standard" -->
<img style="height: 550px;" src="./files/paint.png"/>
===
<!-- .slide: data-state="standard" -->
## Examples of documentation
+ Think of projects with good documentation.
_What do you like about them?_
+ Think of projects with less good documentation.
_What don't you like about them? Are you missing anything?_
<quotation>NB: You can choose a mature library with lots of users, but try to also think of less mature projects you had to collaborate on, or papers you had to reproduce.</quotation>
===
<!-- .slide: data-state="standard" -->
## Types of documentation
<div class="fragment">
+ README files
+ In-code documentation
+ API documentation
+ Tutorials
+ ...
</div>
===
<!-- .slide: data-state="standard" -->
## A good README file
+ README file is first thing a user/collaborator sees
+ What should be included in README files?
<ul>
<li contenteditable="true">...</li>
<li contenteditable="true">...</li>
<li contenteditable="true">...</li>
<li contenteditable="true">...</li>
<li contenteditable="true">...</li>
<li contenteditable="true">...</li>
<li contenteditable="true">...</li>
</ul>
Note:
+ A descriptive project title
+ Motivation (why the project exists) and basics
+ Installation / How to setup
+ Copy-pasteable quick start code example
+ Usage reference (if not elsewhere)
+ Recommended citation if someone uses it
+ Other related tools ("see also")
+ Contact information for the developer(s)
+ License information
+ Contributing guidelines
===
<!-- .slide: data-state="standard" -->
## Why write in-code documentation?
In-code documentation:
+ Makes code more understandable
+ Explains decisions we made
===
<!-- .slide: data-state="standard" -->
## When **not** to use in-code documentation?
+ When the code is self-explanatory
+ To replace good variable/function names
+ To replace version control
+ To keep old (zombie) code around
===
<!-- .slide: data-state="standard" -->
## Readable code vs commented code
```python=
# convert from degrees celsius to fahrenheit
def convert(d):
return d * 5 / 9 + 32
```
vs
```python=
def celsius_to_fahrenheit(degrees):
return degrees * 5 / 9 + 32
```
===
<!-- .slide: data-state="standard" -->
## What makes a good comment?
**Comment A**
<pre data-id="code-animation"><code style="overflow: hidden;" data-trim class="python">
# Now we check if temperature is larger than -50:
if temperature > -50:
print('do something')
</code></pre>
**Comment B**
<pre data-id="code-animation"><code style="overflow: hidden;" data-trim class="python">
# We regard temperatures below -50 degrees as measurement errors
if temperature > -50:
print('do something')
</code></pre>
How are these different? Which one do you prefer?
===
<!-- .slide: data-state="standard" -->
## Docstrings: a special kind of comment
```python=
def celsius_to_fahrenheit(degrees):
"""Convert degrees Celsius to degrees Fahrenheit."""
return degrees * 5 / 9 + 32
```
Why is this OK?
Note:
Docstrings can be used to generate user documentation.
They are accessible outside the code.
They follow a standardized syntax.
===
<!-- .slide: data-state="standard" -->
## In-code commenting: key points
+ Explicit, descriptive naming already provides important documentation.
+ Comments should describe the why for your code, not the what.
+ Writing docstrings is an easy way to write documentation while you code, as they are accessible outside the code itself.
===
<!-- .slide: data-state="standard" -->
## User/API documentation
+ What if a README file is not enough?
+ How do I easily create user documentation?
===
<!-- .slide: data-state="standard" -->
## Tools
+ **Sphinx** (documentation generator)
- creates nicely-formatted HTML pages out of .md or .rst files
- programming language independent
+ **Github pages** (deploy your documentation)
- set up inside your GitHub repository
- automatically deploys your Sphinx-generated documentation
===
<!-- .slide: data-state="standard" -->
## Take-home message
+ Depending on the purpose and state of the project documentation needs to meet different criteria.
+ Documentation can take different shapes:
+ Readable code
+ In-code comments
+ Docstrings
+ README files
+ Tutorials/notebooks
+ Documentation is a vital part of a project, and should be kept and created alongside the corresponding code.
